PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012680-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 317aa    MW: 35566.3 Da    PI: 4.4439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012680-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1995145155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp+    r  r++lg++ taeeAa  +++a+ +l+g
  AHYPO_012680-RA  95 KKFRGVRRRP-WGKWAAEIRDPV----RrVRIWLGTYNTAEEAAMVYDNAAIQLRG 145
                      59********.**********63....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-3295154No hitNo description
PROSITE profilePS5103223.65796153IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2196153IPR016177DNA-binding domain
SMARTSM003801.1E-3696159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2996153IPR001471AP2/ERF domain
PfamPF008472.6E-1296145IPR001471AP2/ERF domain
PRINTSPR003675.3E-1097108IPR001471AP2/ERF domain
PRINTSPR003675.3E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSRKKTSTPL AAVPKVLRLS VVDNEATDSS SDEETNLFRR RRVRRYVNEI IIQPTTAVSA  60
IADINVQSKI NKKGSSRRKS NTSTAVDTAA KGGVKKFRGV RRRPWGKWAA EIRDPVRRVR  120
IWLGTYNTAE EAAMVYDNAA IQLRGSDALT NFAIPPSPLV VESHAPSSSG GYESSDEYAS  180
QKLLCSPTSV LNFNGSVEEE TSRFKPDENE RSEPVKSEYS CEDLLDTSYL NNFFNFEEPD  240
PIIFDELKSS ETDVDFFSPE FNFDGFGNIY DDFEIDFDFK FNTMNNDTYS SSNLLEVEDY  300
LQDMNDTFAA DCIVGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2095154161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2090163168ATERF1
3gcc_A1e-2090163168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726808.11e-92ethylene-responsive transcription factor CRF4-like
RefseqXP_021764936.12e-92ethylene-responsive transcription factor CRF4-like
TrEMBLA0A0K9QW282e-86A0A0K9QW28_SPIOL; Uncharacterized protein
STRINGXP_010671529.13e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-46cytokinin response factor 4