PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012684-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 206aa    MW: 23421 Da    PI: 6.424
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012684-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.85.2e-1417582159
                     -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                      r+YYrCt++   gC ++k+v+rs++dp ++e+ Y+g+H+++
  AHYPO_012684-RA 17 YRAYYRCTFRvlqGCLATKQVQRSDDDPCYFEVSYRGTHTCS 58
                     59*******9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031062.3E-121657IPR003657WRKY domain
SMARTSM007742.0E-91659IPR003657WRKY domain
SuperFamilySSF1182901.03E-121659IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-131659IPR003657WRKY domain
PROSITE profilePS5081111.6581855IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MLYTQKLLLF TLLMFYYRAY YRCTFRVLQG CLATKQVQRS DDDPCYFEVS YRGTHTCSQA  60
SSSSPSVGPK LEPIQSFSDP PHDHSKNIIW NFKTENNNTQ DIKPIVTNNP NHLKPSTFSF  120
PSINPLIKTQ QTPTTLLNYN DNNFVNHATF PTNHTNCENI GVIDHHLQEV VHPSSTSATN  180
SPPFASDLTF DHQGEIDDEF AHFFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671912.14e-41PREDICTED: probable WRKY transcription factor 53
STRINGXP_010671912.12e-40(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-19WRKY family protein