PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012694-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27785.9 Da    PI: 10.0889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012694-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl  yss
  AHYPO_012694-RA  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAQVALIVFSTKGKLAHYSS 59
                     79***********************************************96 PP
2K-box82.87.7e-28861779100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       e++++ s+  e+ kL +++e Lqr+ Rh++Ged+++L+l+eLq+LeqqL+ + k+iRskKn+l++e+i++lqk ek + e+n++L k+++e
  AHYPO_012694-RA  86 SESQQEVSWAIEHPKLVAKLEVLQRNMRHYVGEDVDTLNLRELQHLEQQLDAAQKRIRSKKNQLMHESISQLQKNEKVMLEQNNKLVKMMKE 177
                      67888999******************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.81161IPR002100Transcription factor, MADS-box
CDDcd002654.02E-39274No hitNo description
SuperFamilySSF554551.24E-31285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2387175IPR002487Transcription factor, K-box
PROSITE profilePS5129713.89691188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FSKRRSGLLK KANEISVLCD AQVALIVFST KGKLAHYSST  60
HSSMERILER YERYCCAERQ LVAPGSESQQ EVSWAIEHPK LVAKLEVLQR NMRHYVGEDV  120
DTLNLRELQH LEQQLDAAQK RIRSKKNQLM HESISQLQKN EKVMLEQNNK LVKMMKETDK  180
KIREQQNPNP DFLLSAPPNP FPPLSILGGA YQEKVLQTSA QANLQAKTNS NIPPWMFTHN  240
GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19174172MEF2C
5f28_B2e-19174172MEF2C
5f28_C2e-19174172MEF2C
5f28_D2e-19174172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737016.11e-124truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN67e-87FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0K9QKC71e-121A0A0K9QKC7_SPIOL; Uncharacterized protein
STRINGXP_010666772.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-80AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]