PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012724-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 101aa    MW: 11967.4 Da    PI: 9.1115
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012724-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95.2e-141541063
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     +++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++  +++ +e+
  AHYPO_012724-RA  1 MISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLIDKLNHASQSHQRVLQEN 54
                     689***************************************999999988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.657157IPR004827Basic-leucine zipper domain
CDDcd147023.27E-14148No hitNo description
SuperFamilySSF579597.74E-12146No hitNo description
PfamPF001704.3E-11154IPR004827Basic-leucine zipper domain
SMARTSM003383.6E-7156IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-9248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MISNRESARR SRMRKQRHLD ELWSQVVWLR NENHQLIDKL NHASQSHQRV LQENLQLKQQ  60
TSELRQIITD IQIGSPYSSL QHFQEVVNGT YLDQDHQLPN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694542.14e-48PREDICTED: basic leucine zipper 43
SwissprotQ9FMC23e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1R3G3L27e-42A0A1R3G3L2_COCAP; Uncharacterized protein
STRINGXP_010694542.12e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-40basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]