PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012728-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 226aa    MW: 25608.1 Da    PI: 7.7113
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012728-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.24.6e-103681342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e+ ++ + C+ +   lC +C  ++H+       H++vp+
  AHYPO_012728-RA 36 VWVCEVCERAPAAFLCKADAASLCVTCDANIHSAnplahlHQRVPI 81
                     689*****************************6699**99999987 PP
2CCT69.67.9e-24156199144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Re +++RY+eK+k+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  AHYPO_012728-RA 156 REGRVMRYREKKKKRKFEKTIRYASRKAYAESRPRIKGRFAKRT 199
                      99****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-143481IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5523481IPR000315B-box-type zinc finger
PfamPF006432.5E-73581IPR000315B-box-type zinc finger
CDDcd000211.50E-83781No hitNo description
PfamPF062031.4E-17156198IPR010402CCT domain
PROSITE profilePS5101716.46156198IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMIKVELPGG DTDNWAHVCD MRIDATNHVA SRHERVWVCE VCERAPAAFL CKADAASLCV  60
TCDANIHSAN PLAHLHQRVP ITLQQEFSVP EINCGSDRFG EGKDDQQKQY QNLLFGMECE  120
SKSSISQNVS LNSCTYAKLD AMSDEKSPKE SAIDDREGRV MRYREKKKKR KFEKTIRYAS  180
RKAYAESRPR IKGRFAKRTD VEAEVEQMFT NSLMALLHYP SEPIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854092.17e-78zinc finger protein CONSTANS-LIKE 2 isoform X2
SwissprotQ9SK534e-48COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0K9RWH42e-76A0A0K9RWH4_SPIOL; Uncharacterized protein
STRINGCagra.1194s0065.1.p6e-48(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-42CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]