PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012734-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28662.8 Da    PI: 8.6643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012734-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.5e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien   rqvtfskRr g+lKKA+EL vLCdaeva+iifsstg+l+e+ss
  AHYPO_012734-RA  9 KKIENANSRQVTFSKRRSGLLKKAHELAVLCDAEVALIIFSSTGRLFEFSS 59
                     68***********************************************96 PP
2K-box71.32.9e-249117219100
            K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +e+++Lk+ei +Lq +q++llG+dL+ Ls+keLqqLe+qL  sl ++++kK++ll+eq+e+++ +e+++  en++Lr++++e
  AHYPO_012734-RA  91 KEVDNLKDEIMSLQVKQKRLLGKDLSGLSIKELQQLENQLTVSLLSVKAKKDQLLMEQLEHSRAQEQRALLENESLRRQIAE 172
                      79*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.997161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-33275IPR002100Transcription factor, MADS-box
CDDcd002655.79E-44275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.51986176IPR002487Transcription factor, K-box
PfamPF014867.4E-1990170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRSGLLK KAHELAVLCD AEVALIIFSS TGRLFEFSSS  60
SMKRTLARYK NTKESPDAML GNPKMEIEEL KEVDNLKDEI MSLQVKQKRL LGKDLSGLSI  120
KELQQLENQL TVSLLSVKAK KDQLLMEQLE HSRAQEQRAL LENESLRRQI AELRGFVTPS  180
EHLEPMYLEY YPLQKRVRSE TNTTSGSDGL SNSEFDKSDS DITLHLGPPC DHNLNLKRKV  240
TVTESESGSL AASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-23174174Myocyte-specific enhancer factor 2B
1tqe_Q6e-23174174Myocyte-specific enhancer factor 2B
1tqe_R6e-23174174Myocyte-specific enhancer factor 2B
1tqe_S6e-23174174Myocyte-specific enhancer factor 2B
6c9l_A6e-23174174Myocyte-specific enhancer factor 2B
6c9l_B6e-23174174Myocyte-specific enhancer factor 2B
6c9l_C6e-23174174Myocyte-specific enhancer factor 2B
6c9l_D6e-23174174Myocyte-specific enhancer factor 2B
6c9l_E6e-23174174Myocyte-specific enhancer factor 2B
6c9l_F6e-23174174Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736412.11e-139agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392955e-76AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0K9QY751e-129A0A0K9QY75_SPIOL; Uncharacterized protein
STRINGXP_010694750.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-72AGAMOUS-like 15