PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012743-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19468.8 Da    PI: 10.7975
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012743-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-23957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien+s+r v fskRr+g++KKA+E+S+LC+aeva+i+fs+ gk + +
  AHYPO_012743-RA  9 KKIENSSKRLVAFSKRRTGLFKKANEISTLCGAEVAIIVFSPGGKAFSF 57
                     68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-29173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.277161IPR002100Transcription factor, MADS-box
CDDcd002652.01E-32271No hitNo description
PRINTSPR004043.0E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRRKIEMKK IENSSKRLVA FSKRRTGLFK KANEISTLCG AEVAIIVFSP GGKAFSFGQP  60
SVEKVLQQYQ NKNRHIQTPG SRTHKVRGLK LTKRLANLDA QLEIEKKTLE IHKAAMKCKI  120
DTNQSIAQLD LDELLKLQEQ IQDLSSKSEM RVREIEASQA LLMLANTSTF KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15173173MEF2C
5f28_B3e-15173173MEF2C
5f28_C3e-15173173MEF2C
5f28_D3e-15173173MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667929.13e-59PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010667929.11e-58(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.13e-29AGAMOUS-like 91