PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012779-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 509aa    MW: 55549.2 Da    PI: 6.0342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012779-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09323371355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  AHYPO_012779-RA 323 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 371
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.74E-11318375No hitNo description
SuperFamilySSF474596.28E-17318389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16321388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6323371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDVNDKDRLE LEKRNDESLS YHPLGISSEW RYDIPNFTNS SMGLVSSGNS MDVCGDAVGP  60
SCSSSSMVDS YAPTVWEHPV NSQPLNFSEM NVHSGSGVSD PLSMLKGSLV LPGMSGMLPH  120
SLSQFLADSA FIERAARFSS FSGEHFGDML NPLGIHQSGS PYIRGGIMMQ GSQDVSSGKN  180
FKPLAGRHPQ KSEAGLAHTS KDVSLPHVEG NSPKNEMTVE KSHDEVKQGA SVSGNDSEEP  240
EFSGGMAHDE GPLLASKSAK KRKRSKQDLA AEQDNVDQQK GEHNLTPTNN EPNEKHLKQS  300
SQLFDSPKEE YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML  360
DEIINYVQSL QRQVEFLSMK LATVNPRLDF SSERLLAKDQ MFSARAGPSS GLVFSPDIPM  420
PYPSLHPTQV PMLPPGLPGT GNPSDTLKRV ISSQLPNMGG GYKDPILQLP NMWDGELHNI  480
VQMGFNGNPP LDHETNCSEP QEQMKAES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264KKRKRS
2259266KKRKRSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718309.10.0transcription factor bHLH49-like isoform X1
RefseqXP_021718310.10.0transcription factor bHLH49-like isoform X1
TrEMBLA0A0K9R4Y30.0A0A0K9R4Y3_SPIOL; Uncharacterized protein
STRINGXP_010681176.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-94bHLH family protein