PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012790-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 386aa    MW: 43859.1 Da    PI: 5.0965
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012790-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-061659340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +  k+++++C  ++ +lC++C  + H+       H++v
  AHYPO_012790-RA 16 ARACDCCIIKRARWYCPADDAFLCQSCDGSVHSAnplarrHERV 59
                     5789****9***********************657888888876 PP
2CCT24.21.2e-09361382122
              CCT   1 ReaallRYkeKrktRkFeKkir 22 
                      Rea++lRY+eKr+tR+F+Kkir
  AHYPO_012790-RA 361 REAKVLRYREKRRTRLFSKKIR 382
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-81461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1531461IPR000315B-box-type zinc finger
PfamPF006433.1E-51759IPR000315B-box-type zinc finger
CDDcd000215.02E-71761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MINDKKIANA VSGKTARACD CCIIKRARWY CPADDAFLCQ SCDGSVHSAN PLARRHERVR  60
LKTASLNPSN ELQRPDLPTW HRGLTRKPRT PRHGKNRQLK PEKRKSIHVI VPDLGMEDTT  120
SSQEGDTEDQ LLYRVPVFDP FVSGYESRSM ESEGGFDMGK SLLSNPKPKD SSDEYLPFDL  180
DLDQFAADVE TLLGKGLDDE SYGIDELGLL DCNPTNNNNN NNENHKNING KIKEEYEMGN  240
EGMMMTRCDD HDYDEEEKKV IMIETSIGNE MICKLDDDED DDETEDSKEE GIKRRKILLR  300
LDYEAISDAW ASNGSPWMTG QRPQINLEDC WPHFMGTCGT EGHDQLLFGD HPIGVIGDAG  360
REAKVLRYRE KRRTRLFSKK IRKIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667660.11e-158PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0J8DWJ01e-157A0A0J8DWJ0_BETVU; Uncharacterized protein
STRINGXP_010667660.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.19e-81B-box type zinc finger protein with CCT domain