PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012796-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 245aa MW: 28063.9 Da PI: 6.7252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012796-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.2e-05	109	159	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+++ne ++ R+++ +++ L +llP + + + a++Le+A +Y k L AHYPO_012796-RA 109 RRKNNNETKKNIRHKMSEKIYSLGKLLPGG---HRHRKNTAAMLEEAEKYAKFL 159 89*************************6...5556667999**9997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-9	106	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-8	106	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.877	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.63E-6	108	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MAPDSSPELF NHLENPFPYN YNHAYDYNIN PVVHETLSQI VPNPFYFFHE LQPSPVSEIS 60 PEFYNPSLPN LLSLENEIQS QPPETIKDDY TLDSILENYL KTSKSNQKRR KNNNETKKNI 120 RHKMSEKIYS LGKLLPGGHR HRKNTAAMLE EAEKYAKFLE AQVEALKCMP TESKLSELSE 180 LGGNHELGKL SRQQVLQIVV NSPKAQMVMA DNGWCLVSAE QIELMKRIEA RQKVIQQLMN 240 NIPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860729.1	1e-70	uncharacterized protein LOC110799769
TrEMBL	A0A0K9RTT4	3e-69	A0A0K9RTT4_SPIOL; Uncharacterized protein
STRING	XP_010689501.1	2e-56	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	4e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_012796-RA