PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012860-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 454aa    MW: 49714.4 Da    PI: 5.2907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012860-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063603981154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  AHYPO_012860-RA 360 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 398
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.62349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10359406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-7359402No hitNo description
SMARTSM003530.003360404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAEEFCGTTN WWDSTPTNSR FDGGGGGGRG GSSSTSSTTT VANNGGGPVF GWLTDGPTGV  60
DTKMDSSSVQ HVGLGLSSQP MVEWKQQPSA LLRNSEKVDN SFRSMLQEGG MGLNTNFEQD  120
TKEGEVIFGR NNNNNDNNNE NDNFSEIQQW REKLYQGNEN SCSDFKQIGR GFSLDSHQPQ  180
FSPSGSSIES TVTCQGLVAP SNFQVDSTST SSVFGSPSSL LQGLNMGGPE QQQQQQQLNN  240
SSFQQNNFGI GVTNDYQSQL SSSWAKDPQF LRASSPKQHQ LQFINNTPYW NASTPLNEMR  300
PSFFSSLQGA QLPNMPTFEQ KPKTTMEVRD TSSMAKKSNS ENNPKRTRDA ASSTLPPFKV  360
RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QIGSNEKAKI DTNNPKQDLR  420
SRGLCLVPVS STFPVTHETT VDFWTPTFGG TFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725986.10.0transcription factor bHLH123-like isoform X3
TrEMBLA0A0K9RQ940.0A0A0K9RQ94_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RS620.0A0A0K9RS62_SPIOL; Uncharacterized protein
STRINGXP_010694302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.19e-59bHLH family protein