PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012903-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 108aa MW: 11893.8 Da PI: 8.2141

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012903-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.2	1.4e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+k+C++apyfp ++p++f vhklFGasnv+kll++lpe++r da+sslv+eA+ar++dPvyG+vg i+ lq+q++ql+ +l AHYPO_012903-RA 7 PCASCKLLRRRCVKECIFAPYFPPDDPQRFGLVHKLFGASNVSKLLQELPENKRADAVSSLVFEANARIKDPVYGCVGAISLLQNQVSQLQMQL 100 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e AHYPO_012903-RA 101 EQAHAE 106 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.039	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MGSGSSPCAS CKLLRRRCVK ECIFAPYFPP DDPQRFGLVH KLFGASNVSK LLQELPENKR 60 ADAVSSLVFE ANARIKDPVY GCVGAISLLQ NQVSQLQMQL EQAHAELM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-50	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-50	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685903.2	2e-64	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	6e-61	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A314KUE5	1e-61	A0A314KUE5_NICAT; Lob domain-containing protein 12
STRING	XP_009760471.1	2e-62	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-63	LBD family protein

Link Out ? help Back to Top
Phytozome	AHYPO_012903-RA

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]