PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012904-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 170aa MW: 19410.7 Da PI: 4.712

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012904-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.6	2.1e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE++ l ++v+++G W I + + R+ ++k++w++ AHYPO_012904-RA 5 KLKWTPEEEDALREGVNKHGVSKWQVILKDPQfrhilYSRSNIDLKDKWRN 55 689***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.443	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.95E-16	2	60	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-9	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-12	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.27E-18	7	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGNPKLKWTP EEEDALREGV NKHGVSKWQV ILKDPQFRHI LYSRSNIDLK DKWRNMNHAK 60 SRPKQNPKSA IQPQKSKEAQ VVGEDEAGAG ADRLKIEKQE KVISSSGEME EEVLAELIAE 120 LRNNNDPEHA QYCKDLEILL EDDQKADEIL AYANEIMDRP LDNYECSDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	2e-23	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	AHYPO_012904-RA