PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012990-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 394aa    MW: 43619.7 Da    PI: 6.158
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012990-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69e-083203532154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  AHYPO_012990-RA 320 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 353
                      469*****************************87 PP
2ELK29.41.8e-10274295122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+ +++++++E++
  AHYPO_012990-RA 274 ELKHELKQGYKDKIVDIREEIL 295
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-19107151IPR005540KNOX1
PfamPF037901.7E-17109150IPR005540KNOX1
SMARTSM012561.9E-28162217IPR005541KNOX2
PfamPF037912.4E-21166216IPR005541KNOX2
SMARTSM011885.1E-4274295IPR005539ELK domain
PfamPF037891.3E-5274295IPR005539ELK domain
PROSITE profilePS512139.969274294IPR005539ELK domain
PROSITE profilePS5007111.726294357IPR001356Homeobox domain
SMARTSM003892.4E-11296361IPR001356Homeobox domain
SuperFamilySSF466896.42E-16296360IPR009057Homeodomain-like
CDDcd000863.53E-12297358No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25301358IPR009057Homeodomain-like
PfamPF059201.1E-17314353IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAFHQHHLSQ AEMAAQFGGD QTTSSNPHHQ PNWLTSALLT SSAGPGGPNN FLNLHSVDDS  60
AGISAIPAQP GELTHNEDSG KPEIGDGDGS TGGGGEQQQQ QVNWQNAKCK AEILGHPLYE  120
QLLSAHVACL RIATPVDQLP RIDAQLAQSQ NVVAKYSALA NGHALVGDDK ELDQFMTHYV  180
LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD DDDDPLDSDS  240
NLFDGGLDGP DTMGFGPLVP TESERSLMER VRQELKHELK QGYKDKIVDI REEILRKRRA  300
GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS  360
SSSALKSKRK RYTNMSLISV LYFIIFHWLS LRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12297361872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350370RKRNWHSNPSSSSALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.10.0homeobox protein knotted-1-like 2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E20.0A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGXP_010665744.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-163KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]