PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013001-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 558aa    MW: 62211.9 Da    PI: 6.1613
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013001-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.85.8e-09201222122
          G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                      kpr++W+ eLH++Fv av+qLG
  AHYPO_013001-RA 201 KPRVVWSVELHRKFVAAVNQLG 222
                      79*******************7 PP
2Response_reg79.41.2e-26201281109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+++l+k +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ +++ + ++ 
  AHYPO_013001-RA  20 VLAVDDDPICLRLLETLLRKCQY-HVTTTSQAITALKMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANDDTKLVMKGISH 111
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+  eel +
  AHYPO_013001-RA 112 GACDYLLKPVRLEELKN 128
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-3617139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4317158No hitNo description
SMARTSM004481.3E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.95919134IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-2420128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.42E-2821134No hitNo description
Gene3DG3DSA:1.10.10.604.6E-9198226IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTVEQRRNEA NDQFPVGMRV LAVDDDPICL RLLETLLRKC QYHVTTTSQA ITALKMLREN  60
KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAND DTKLVMKGIS HGACDYLLKP  120
VRLEELKNIW QHVIRRKKFD SRDRNGSNNR DKNSNDENGN RGANSDQDAK LSRKRKDQNM  180
DDDEDQDENE HENEDPSSQK KPRVVWSVEL HRKFVAAVNQ LGLDSMCLPI ILFYEVKYRL  240
YLKRISSVAN QQANMVAALG GPEYLCMNSV NFHGFTGSPQ FQNNPLRSIP PPGVLGRLNT  300
PAGLGLHGLS PSGLVQLNQA QIATSSLADS KFQPNMLQGN HPRTVLQGTP SLEFEQPHKS  360
NTILSGSSNS ILNLPNSSLT MQGRSTQDRQ SLQGFGITSE SPPNLPDHNR CNSNWPAAVQ  420
SQPNLTNPVE NIPIQSSSLM TENMMQNMNY PTKQVWDSDF LDSSVNPSVG NTQCVYDSTN  480
PSEVLHRDRG FESMSQPRFD SLSLQYDQIL HNNSGVDMGL KMKQGPFMEQ GARPLGSYNG  540
NGAGSLEDVV TAMYKHV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665929.10.0PREDICTED: two-component response regulator ORR24 isoform X2
SwissprotA2X1N21e-127ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A0K9QN180.0A0A0K9QN18_SPIOL; Two-component response regulator
STRINGXP_010665924.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-104response regulator 12