PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013031-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

YABBY

Protein Properties

Length: 119aa MW: 13282.4 Da PI: 10.403

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013031-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	25.4	4.3e-08	4	25	2	23
YABBY 2 dvfssseqvCyvqCnfCntila 23 ++ +e++Cyv+CnfCnt+la AHYPO_013031-RA 4 ELAPPPEHLCYVRCNFCNTVLA 25 567889**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-5	8	25	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MSMELAPPPE HLCYVRCNFC NTVLAGYNFL EKPGGFCNSI DHHITKVQPC SSSSSASTQP 60 DSPRPFVVKR RRYSASKQQI RKLLTGRLLA LPLRIGQGFF RTPQLDHLLG AAKPINQTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680651.1	7e-21	PREDICTED: protein CRABS CLAW
Refseq	XP_010680652.1	7e-21	PREDICTED: protein CRABS CLAW
STRING	XP_010680651.1	3e-20	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_013031-RA