PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013032-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 408aa    MW: 45279.9 Da    PI: 6.8264
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013032-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.64.1e-39173250178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv gC++dls+ k+y++rhkvC+ h+k+p v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa hn+rrr+ q+
  AHYPO_013032-RA 173 CCQVLGCNTDLSSFKSYYKRHKVCDLHTKTPRVIVDGIEQRFCQQCSRFHLLGEFDDIKRSCRRRLAAHNKRRRRLQQ 250
                      6*************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-31170235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.752171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-36173251IPR004333Transcription factor, SBP-box
PfamPF031103.0E-30174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
VQKKEKSILF ILMDSWKYVS QEKGVCLSED LDFPVDFHNC KSKMMGCEIK PIINVENYPL  60
ISNTQALERM DFLDLGFGDD IRKSYFISGE PSGEVFSDEI GSDNHPSLGG EEKESRSRVS  120
NDFSLVDLKL GRLEDGGIGE GSELMNTHVP ESSIASSPSK KARSTSLSMR SQCCQVLGCN  180
TDLSSFKSYY KRHKVCDLHT KTPRVIVDGI EQRFCQQCSR FHLLGEFDDI KRSCRRRLAA  240
HNKRRRRLQQ SSESEGIPSA YHGPTRNGEG IENSVKSSNF VLQMGCIEEL NESIPSNVKG  300
NIFGPMKPTI ENLSSIQPSS RALSLLSTQS HNSSSPLLET TSTSRVYEPG TYLMKTNEGG  360
PTTINPSHGD TVGLHPKSRG IILNLLQLSS HLQKVEQERH LTDDEAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-251742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230247KRSCRRRLAAHNKRRRRL
2242247KRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680650.11e-178PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0K9RQ591e-133A0A0K9RQ59_SPIOL; Uncharacterized protein
STRINGXP_010680649.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-29SBP family protein