PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013056-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 460aa    MW: 51865.8 Da    PI: 8.8804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013056-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24e-1367112251
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                      +y+GVr ++ +g+++AeIrd +     r  +++lg+f ta+eA+ a +  ++
  AHYPO_013056-RA  67 KYRGVRMRP-SGKYAAEIRDpF-----RkVKIWLGTFNTAKEAYDAFCLKKL 112
                      8********.7*********76.....45**********7777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-1267127IPR001471AP2/ERF domain
PROSITE profilePS5103215.52767124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1667107IPR001471AP2/ERF domain
PfamPF008477.4E-767114IPR001471AP2/ERF domain
CDDcd000185.88E-1667109No hitNo description
SuperFamilySSF541711.44E-1267114IPR016177DNA-binding domain
PRINTSPR003674.7E-66879IPR001471AP2/ERF domain
PRINTSPR003674.7E-690106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-5211243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MKTFRVFCTD PDATESSSSD EDEKIGGKSA KKKCFSREIN IGSGRDDPGK SMDQVSPTEE  60
KPGKVVKYRG VRMRPSGKYA AEIRDPFRKV KIWLGTFNTA KEAYDAFCLK KLEFDALLMM  120
RNSVIEGEIG EKQGKIADEK IGENKGKIDE KGIEIDEKEG EIGEKEKDIK VYKQKEDEFN  180
ERFKGKEMKG KIHGFEGFER RKGRSIVRDL EGRWEAKVQH PKTKTYVSLG TFRTRKQAQA  240
AVREEKMVQL RTRFEGCNRS NRHCCGCKNC DDPQGVGCKE IVIGLAAPRL LNDGDAATNS  300
ELPAGVRLTK SGTFGAWITC PVSGIERFLR SYKTLEKAVN AVNRGKFNQR FKSRTRKRFR  360
PVEDVLRTSK KTKCDVIHGS PTSVLDAENE NIAMASSSID NQFETQARVV LPFTFDEGVK  420
WGIMNEYGQL LGEYSKCDEP MYLSTCDEDD AATDYGWRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723823.11e-118uncharacterized protein LOC110691221
TrEMBLA0A0K9RMK61e-108A0A0K9RMK6_SPIOL; Uncharacterized protein
STRINGXP_010681552.12e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-15ERF domain protein 11