PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013130-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 430aa MW: 46863.2 Da PI: 7.7974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013130-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	320	359	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AHYPO_013130-RA 320 RREKISERMKLLQDLVPGC----DKVTGKALMLDEIINYVQSLQ 359 9***************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.687	308	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-4	314	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	319	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.70E-7	320	363	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-13	321	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MEKEFFLNGG IHNPSLQFEA PFSWHTMEIQ TSQSPDCFLS TPPPTDQFES ALSSMVSSPA 60 ASNSPLSNDN FMIRELIGKL GSICNSGDIT NNSCYSTPLS SPPKMGIPMP NMDHLVKENL 120 PILGNLPAMM GDPGFAERAA RFSSFGSRSF NGRTTQFGMN NSTKNSNNGN GELGFPSNFS 180 NLGGNGKLQR VSSSPSLKEI GSQCENNNNR KHGGNFGQEC NNSRENSSIS GQNLGGENGS 240 NRKRKAPTNK GKSKELQSQP HLPSSSNKVA ENGEDSSAKR SKSEESGEAK REENRGDDGK 300 KQSNGNQKPP EPPKDYIHVR REKISERMKL LQDLVPGCDK VTGKALMLDE IINYVQSLQR 360 QVEFLSMKLA SVNPRLDFNM GNLFSKDLPS LCEGDLQSIV QMGYGQKENG FQSQPLHGSN 420 PSPLMKIEF*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MEKEFFLNGG IHNPSLQFEA PFSWHTMEIQ TSQSPDCFLS TPPPTDQFES ALSSMVSSPA  60
ASNSPLSNDN FMIRELIGKL GSICNSGDIT NNSCYSTPLS SPPKMGIPMP NMDHLVKENL  120
PILGNLPAMM GDPGFAERAA RFSSFGSRSF NGRTTQFGMN NSTKNSNNGN GELGFPSNFS  180
NLGGNGKLQR VSSSPSLKEI GSQCENNNNR KHGGNFGQEC NNSRENSSIS GQNLGGENGS  240
NRKRKAPTNK GKSKELQSQP HLPSSSNKVA ENGEDSSAKR SKSEESGEAK REENRGDDGK  300
KQSNGNQKPP EPPKDYIHVR REKISERMKL LQDLVPGCDK VTGKALMLDE IINYVQSLQR  360
QVEFLSMKLA SVNPRLDFNM GNLFSKDLPS LCEGDLQSIV QMGYGQKENG FQSQPLHGSN  420
PSPLMKIEF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863521.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A0K9RKW5	1e-175	A0A0K9RKW5_SPIOL; Uncharacterized protein
STRING	XP_010685111.1	1e-174	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	9e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013130-RA