PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013185-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 428aa    MW: 46329.9 Da    PI: 7.3451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013185-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.8e-126489227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C+f++rtG C++G++C+F+H+p
  AHYPO_013185-RA 64 GEPDCSFYLRTGLCRFGSTCRFNHPP 89
                     6899********************97 PP
2zf-CCCH31.14e-1094113827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      ++++tGtCk+G++CkF+H++
  AHYPO_013185-RA  94 YYLKTGTCKFGATCKFHHPK 113
                      8*****************96 PP
3zf-CCCH36.67.6e-12136159427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +++rtG+Ck+G++CkF+H++
  AHYPO_013185-RA 136 SECAYYLRTGQCKFGSTCKFHHPQ 159
                      58********************97 PP
4zf-CCCH38.12.6e-12287312126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C+++++tG Ck+G+ C+F+H+
  AHYPO_013185-RA 287 PGQPECQYYMKTGDCKFGAVCRFHHP 312
                      5789*********************8 PP
5zf-CCCH40.15.9e-13333359127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  AHYPO_013185-RA 333 PGEPLCIFYSRYGICKFGPNCKFDHPM 359
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0566290IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-66289IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-96489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-56790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-46888IPR000571Zinc finger, CCCH-type
SMARTSM003560.02690113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.47494114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-494112IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-894113IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333286314IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6286313IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9288312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5292314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84332360IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7332359IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4337357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAFRDVVVDG DDGDDGTIPI SRPSAVDGSS PLLNEDSMWP VNLRSSEAMD TGICPPGPYP  60
EREGEPDCSF YLRTGLCRFG STCRFNHPPN RKLYYLKTGT CKFGATCKFH HPKDKAGIAG  120
RVPLNVLGYP LRPNDSECAY YLRTGQCKFG STCKFHHPQP STSYGSSSVY PAVQSPTTPG  180
QQSYPGGLTN WSLSRASIFP SPRWQGPSSY TPLILPQGMV SVPGWNAYMG QMGSISSSEG  240
QQQTAGDSAG YGTARQSESA VSASYRSGSV PIGYYALQRD NVFPERPGQP ECQYYMKTGD  300
CKFGAVCRFH HPSERLIPAP DCLLSALGLP LRPGEPLCIF YSRYGICKFG PNCKFDHPMG  360
IFAYNVSPTS TDTSAMRHYL GSSSASAGLT LTSEGLVETA GPGKNRRLSL SETRDLQPGD  420
DEVETDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734383.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9QBJ80.0A0A0K9QBJ8_SPIOL; Uncharacterized protein
STRINGXP_010673925.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1