PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013209-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 210aa MW: 23060.2 Da PI: 6.3405

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013209-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37	9.3e-12	2	46	1	40
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGas 40 +C++C++lr++C+++C+l+p++ p++q++++ +v+k+FG++ AHYPO_013209-RA 2 SCNGCRILRKGCSESCILRPCLqwidtPESQAHATVFVAKFFGRA 46 6******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-8	2	46	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRILR KGCSESCILR PCLQWIDTPE SQAHATVFVA KFFGRAACGR TVNPVSGAVG 60 LLWTGNWHLC QAAVETVLRG GTLRPISEFL VGAPASPFPI TAEVEDNSEV ICFPRAAKDE 120 SWRKQIGTTM IHSSEFSPPS RFTDCKRIKE EDDYHVRHLD LSLTPPTFIQ APPPQRPGTP 180 SLNSEESAAT TVSFESDDYY QPKTLNLFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021714438.1	1e-114	LOB domain-containing protein 38-like
Swissprot	Q9SN23	5e-57	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A0K9Q7W4	2e-98	A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRING	XP_010679613.1	1e-101	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-59	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	AHYPO_013209-RA