PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013291-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 402aa    MW: 43824.7 Da    PI: 6.1894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013291-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10244292355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  AHYPO_013291-RA 244 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 292
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17239309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-11239296No hitNo description
PROSITE profilePS5088815.485241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16242309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7244292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGDDGNSQMG FQHTSDIMLN SPSSGMNTRS MTLGSVYGSG WDPMVSLCQT ENFHAELTKS  60
SSYPLLMENQ GISNSHIQNY PSDPNLVQMS PKLPMFGGRN FPDMVNPFGL SGGSLTPSAL  120
FPQDYASNRS GLDEKTSVNA AQAERGCQFI DERVVGVSPN GKRKRDSESP PINESADLDS  180
HKDRLSDASG QKEQDDRKKK NDQNDAGNAS SKQAGKQVKE DSQGEESPKQ NYIHVRARRG  240
QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM  300
KLATVNPELN FDIERLLSKD SVLSRGSGPS ILGFDQAMGS SHAFSQGIHQ SLTAIPKTAA  360
QYHHIPQAVW DTDLQSLLQM GFDSNSAIAG LGPNGNSKTE M*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855573.10.0transcription factor bHLH74
RefseqXP_021855574.10.0transcription factor bHLH74
TrEMBLA0A0K9S0140.0A0A0K9S014_SPIOL; Uncharacterized protein
STRINGXP_010687581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-76bHLH family protein