PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013294-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GeBP
Protein Properties Length: 329aa    MW: 37589.6 Da    PI: 4.9913
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013294-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.87.7e-29109201198
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      klfqr++seeDei++L+G+i++++k  ++ +dd d+fy fvkk ++++v+k+q+++KirrL kKf+  ++k     +++f++ehdq  f+lskk
  AHYPO_013294-RA 109 KLFQRVFSEEDEIMILKGIIEYNSKGVSDLMDDPDDFYAFVKKLLHVDVNKRQILDKIRRLMKKFTIAKSK-----KMKFTNEHDQRLFDLSKK 197
                      579*******************7666668899**********************************99888.....89**************** PP

           DUF573  95 iWgs 98 
                      iW++
  AHYPO_013294-RA 198 IWDK 201
                      **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.3E-26111200IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MARKRNRKSL KETPPEPQSS SSDAELDLSL TDQQHYDGDG EEQIPSNPST KKHPIINSKI  60
PIINVAFPTK STIIIAGLPA QKMFSDDETL KNPTKDHKAS AAQEDGSKKL FQRVFSEEDE  120
IMILKGIIEY NSKGVSDLMD DPDDFYAFVK KLLHVDVNKR QILDKIRRLM KKFTIAKSKK  180
MKFTNEHDQR LFDLSKKIWD KTDDDSISIV AVSDDQDINL ETESKDEKIT DDQDNNMEID  240
NGQKQEDGKV LMGNDDIEED LCVGENIVNE KVRKRALRKM GVKGRAEIDE MWEKVAKVEW  300
KVRMLREEVQ MEETKKIMEA LGWGIGNC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-21DNA-binding storekeeper protein-related transcriptional regulator