PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013311-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 243aa    MW: 26065.9 Da    PI: 9.3595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013311-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-203383155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+++++g
  AHYPO_013311-RA 33 THFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDDAARAFRG 83
                     589*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-133383IPR001471AP2/ERF domain
CDDcd000184.63E-233391No hitNo description
SuperFamilySSF541712.35E-223492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-323491IPR001471AP2/ERF domain
SMARTSM003802.6E-383497IPR001471AP2/ERF domain
PROSITE profilePS5103223.4993491IPR001471AP2/ERF domain
PRINTSPR003675.0E-113546IPR001471AP2/ERF domain
PRINTSPR003675.0E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPKLNGNGG GSNGGVVGLK VNAVNNGNVG KETHFRGVRK RPWGRYAAEI RDPTKKSRVW  60
LGTFDTAEEA ARAYDDAARA FRGAKAKTNF PLPSEIHHSV NNNNSNNHSP SHSTVESSSH  120
EKNSPAAPVT MVDSLPLDLN LAGSFAGVKF PFQQVRVAQV PAVGYPAAMN QLMYFHQHFP  180
QPQYISTKNN QQMSFSHVAH APVMASGVQS DSDSSSVVDL NQDLISAPRG LEIDLNQPPP  240
SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-223492261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840409.15e-67ethylene-responsive transcription factor 4-like
TrEMBLA0A0K9R4L71e-65A0A0K9R4L7_SPIOL; Uncharacterized protein
STRINGXP_010686416.11e-61(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-28erf domain protein 9