PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013314-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 869aa    MW: 95388.9 Da    PI: 4.1709
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013314-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06405424525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      lC +f + G+C  G++C+F H
  AHYPO_013314-RA 405 LCEYFVK-GWCIKGSSCRFLH 424
                      8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.108400427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7400425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MASSDSHRCS EEEEEEYEEV EEEEEYEEVE EEVEEEVEEE VQVEEEDPEE IEEDPDEVEE  60
EDPEEVLEEE VEEVVEEEYE DVEEYEEIEE EIEVELTDEE DDTLVEAEVD GDGNGVAKSS  120
EACISVTNPG DCKVVENLSD AAITVTKSCD AIVVEKSSDS GIADTKSCMY KGAAEGDSKV  180
VENLSDAAIT MKSGDANVVK KSSDSGIAVT KSSIDKGAAE GDGAGFDGAK SDFAVPLVID  240
NADGSNDVES KGISRYISVM QSKGSILHDI NADGGGSSPE VQNGDGKEIS SVDDGSSKSP  300
KIFEHIAGPS NDGLDAVKDE HDHVEQVTVI SSIEHGSTPN TVSGQFGKTA DVEQAKLLSV  360
ETDLHSPSRQ DMDLKESRSW FPQVKRRSLS PGAEGEGGNK RPAILCEYFV KGWCIKGSSC  420
RFLHKTDHGN LVEEGILPAK SSGDDAVESE LLIDNQPGPL MQNVNDCMAD PTAGKGIQKE  480
REEDIKSRQY EQMDKVLFAD RTISSSRVSI DSHKSSSGKD GFRSTATLRG IEANIFNENH  540
TFDNHGLSAA ESSMLHHNVF PRYGSSSREY GVSYGTESIS RLVEESAAMR RRYSLDVQSS  600
VPSYYTSSWK STLLQNSSLF SKSDSEKYKT TFTPYNWEPS VPFRSSFFTP PVNGSDVQYD  660
PFRDIEQPER ASLKHSSYGQ TQDIQSVSGK NLLECDIRSQ ISAFDKSYSG HDKAVPAVEA  720
ESAANSASEA QNKSMTEEEN PMVPGSIKAL LKASRSNNDG NSKGPRDLKV DNGRLGNELD  780
DEESKAIRCF RAALIEYVKE LMRPIWHEGL LSKDVYKVIV QKAEDKILST LQPTEVPNST  840
DSIKQYLSSS RSKIWKLIQA YVDKYGRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866274.10.0protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A0K9S0A10.0A0A0K9S0A1_SPIOL; Uncharacterized protein
STRINGXP_010686420.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-28C3H family protein