PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013319-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 386aa MW: 43029.9 Da PI: 8.4244

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013319-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	81	140	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCdstntkfCyynnyslsqPr+fC+aC+ryWt+GG+lrnvPvGgg+rknk++ AHYPO_013319-RA 81 QQQALKCPRCDSTNTKFCYYNNYSLSQPRHFCRACKRYWTRGGTLRNVPVGGGCRKNKRV 140 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	83	139	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-27	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MVGNCEKMLL ISSPSNEWSE LVYDENKNQL DDPKGNLNNT NTNTNHNNMA SVVAATDQQQ 60 HHHFQQQKQQ QQQQQRQLHQ QQQALKCPRC DSTNTKFCYY NNYSLSQPRH FCRACKRYWT 120 RGGTLRNVPV GGGCRKNKRV RRSTNTFSST TANTNTNTTN TNNNSLEASI NSASSIGGAS 180 CNNGNNNVHD LVSSTSNHVN YPLFYGLPTN HSPNSDINFP FSRYDLQNPP QINGLGLGFS 240 SGLLVHNMHN MNLHHPSQNT KQISHDLISS NPLISSTTTN ITSTNTPSTI SSLLHQIKGV 300 NNFQTLLNSY HDGDNNNDLH MKNVKIDHHH HNWSNTTQNQ IDHHHHQTMV SSSDPSILWG 360 SSNGTNLSTW LDPSNNLGSS VPSLI*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MVGNCEKMLL ISSPSNEWSE LVYDENKNQL DDPKGNLNNT NTNTNHNNMA SVVAATDQQQ  60
HHHFQQQKQQ QQQQQRQLHQ QQQALKCPRC DSTNTKFCYY NNYSLSQPRH FCRACKRYWT  120
RGGTLRNVPV GGGCRKNKRV RRSTNTFSST TANTNTNTTN TNNNSLEASI NSASSIGGAS  180
CNNGNNNVHD LVSSTSNHVN YPLFYGLPTN HSPNSDINFP FSRYDLQNPP QINGLGLGFS  240
SGLLVHNMHN MNLHHPSQNT KQISHDLISS NPLISSTTTN ITSTNTPSTI SSLLHQIKGV  300
NNFQTLLNSY HDGDNNNDLH MKNVKIDHHH HNWSNTTQNQ IDHHHHQTMV SSSDPSILWG  360
SSNGTNLSTW LDPSNNLGSS VPSLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686431.1	1e-111	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A0K9RKK6	1e-97	A0A0K9RKK6_SPIOL; Uncharacterized protein
STRING	XP_010686431.1	1e-111	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013319-RA