PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013352-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 468aa    MW: 51447.1 Da    PI: 5.8272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013352-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13237288155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  AHYPO_013352-RA 237 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 288
                      79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-14235291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-13235292No hitNo description
SuperFamilySSF474591.7E-16236305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288236287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10237288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9242293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MQKEESYTVA TQAGGKSVAD CNEEHSSTPP DPTYNYQHTN TSITGSLDYN ILNNPSNTEP  60
INNLILSRTG YQEQPNNTMN CVDRTLSFAD VMQFADFGPK LALTHPQTNN NDHDEHNING  120
IDPVYFLKFP VLGSSSHNTA PYNHSGYNHQ QENAGSVAGV SNNMSNSYTN PVQLEFLSNS  180
HDDNLVGLSL EEKLEPISTG GGGGGGGVAE GINKSSGNTT KRKRPRTIKT NEEVESQRMT  240
HIAVERNRRK QMNEHLRVLR SLMPSSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR  300
RLYGDQARPM VDSSPSSSAV LGLVQQTPPQ FPPPPGNQYV HLQSDDDQLR LMDHQPNPTP  360
GPGGLGLLQE ETAESKSCIA DVEVKVLGFD ALIKILSRRR PGQLIKAIAA LEDLHFSILH  420
TNITTIEQTI LYSFNVKVGN EARFTAEDIA TSVQQIFTFI HANSNII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237248RMTHIAVERNRR
2297301KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750618.11e-178transcription factor FAMA-like isoform X2
SwissprotQ56YJ81e-126FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0J8BDA01e-167A0A0J8BDA0_BETVU; Uncharacterized protein
STRINGXP_010694945.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matos JL, et al.
    Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
    Elife, 2015.
    [PMID:25303364]
  3. Chen L, et al.
    NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
    Development, 2016. 143(9): p. 1600-11
    [PMID:26989174]
  4. Lee JH,Jung JH,Park CM
    Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
    Plant Cell, 2017. 29(11): p. 2817-2830
    [PMID:29070509]
  5. Han X, et al.
    Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
    Plant Physiol., 2018. 176(4): p. 2871-2885
    [PMID:29496884]
  6. Li X,Yang R,Chen H
    The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
    PLoS ONE, 2018. 13(3): p. e0193458
    [PMID:29513733]