PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013384-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 175aa    MW: 19846.1 Da    PI: 9.1617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013384-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-141482146
                     TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqk 46
                     +g+W+++Ed ll++ ++++G+g                         W+ Ia+ ++ gRt++++k++w++
  AHYPO_013384-RA 14 KGPWSAQEDALLLNFIARFGNGgnwislpkkadqilsmvdsprrkiMWAIIASNLP-GRTDNDVKNYWNT 82
                     79******************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-21593IPR009057Homeodomain-like
SuperFamilySSF466892.51E-11893IPR009057Homeodomain-like
PROSITE profilePS5129414.482988IPR017930Myb domain
SMARTSM007171.9E-131386IPR001005SANT/Myb domain
PfamPF002493.5E-121482IPR001005SANT/Myb domain
CDDcd001674.13E-81684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRSPCCDKT KVKKGPWSAQ EDALLLNFIA RFGNGGNWIS LPKKADQILS MVDSPRRKIM  60
WAIIASNLPG RTDNDVKNYW NTKLKRQISS GEFNIINNPI RNSCKKHNNN NNNNNNNNNN  120
NSQIINNQIN ISSTIEKDRS YYEMESLESK KITEEIPSYS SSISTEFNGI SGEED
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840426.18e-36transcription factor MYB87-like
SwissprotQ9FG684e-28RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A068U4L91e-32A0A068U4L9_COFCA; Uncharacterized protein
STRINGXP_010688576.17e-34(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-29myb domain protein 37
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]