PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013438-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 313aa    MW: 35890.3 Da    PI: 4.8599
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013438-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.5e-092552892155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yp+++++  LA+ +gL++rq+ +WF N+R ++
  AHYPO_013438-RA 255 KWPYPTEADKIALAEMTGLDQRQINNWFINQRKRH 289
                      569*****************************885 PP
2ELK30.39.7e-11209230122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LK+qLlr ++++++sLk EFs
  AHYPO_013438-RA 209 DLKNQLLRRFGSHISSLKLEFS 230
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.3E-2172116IPR005540KNOX1
PfamPF037904.4E-2274115IPR005540KNOX1
PfamPF037891.8E-8209230IPR005539ELK domain
SMARTSM011882.6E-5209230IPR005539ELK domain
PROSITE profilePS512139.725209229IPR005539ELK domain
PROSITE profilePS5007112.73229292IPR001356Homeobox domain
SuperFamilySSF466892.74E-20230304IPR009057Homeodomain-like
SMARTSM003893.8E-13231296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-28234294IPR009057Homeodomain-like
CDDcd000863.44E-13238293No hitNo description
PfamPF059208.1E-18249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDMYGIHHQ TVEDYSDKSL ISPDNLILPS DYHSLIMNSG NTTAVRFGSD ELINATCLSE  60
STSVTPDDHT SNSIKIKIAS HPHYPRLLQA YIDCHKVGAP PEIANILDEI KQESDMYSQD  120
IGRGRRTCLG MDPELDEFMD YLLVIIRNKG MLITLWVVIF RRYGDSETIR ESSQEQGSIE  180
EEGVVSSDED CSGGEIDVQD LQPKDGEQDL KNQLLRRFGS HISSLKLEFS KKKKKGKLPR  240
EARQMLFEWW NAHYKWPYPT EADKIALAEM TGLDQRQINN WFINQRKRHW KPSENMQYAL  300
MDGFAGQYFT DD*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3740176e-69DQ374017.1 Beta vulgaris chromosome 9 clone BAC62 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695813.11e-173PREDICTED: homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS61e-105KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0J8BBK51e-171A0A0J8BBK5_BETVU; Uncharacterized protein
STRINGXP_010695813.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.16e-92KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]