PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013439-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 387aa MW: 42479.7 Da PI: 6.5119

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013439-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	190	247	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ l++e AHYPO_013439-RA 190 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLYQRDTTGLTTE 247 9*****************************************9999888777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	188	251	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.8E-10	190	244	No hit	No description
SuperFamily	SSF57959	3.09E-10	190	241	No hit	No description
Pfam	PF00170	7.2E-9	190	246	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.80E-25	191	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESKSSDPST SSPNPDINTI PSKPPNNGTS NSTLFGFSNH NPNPTPLRAP HHRRAHSELT 60 FRIPHDMDLS SDPFTTSSNE EIGSEDDIFT TYIDVDKFGA SGSGPHIGLG LSVDGDHRVL 120 TNDNNININS SENNNNDDNN AGRPRHRHSN SVDAMTSSGG GSGNVFGEIM EAKKAMPPDK 180 LAELWTIDPK RAKRILANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLTLYQRD 240 TTGLTTENTE LKLRLQAMEQ QAQLRDALNE ALKQEVERLR AATGEMMGPS ESFNLGMHGM 300 QYNHSAFYPL PQQHAPQAQQ SMQLPSYHQS QGNMHHMHSS NSQNPSEFMP NDHLGRLQGL 360 DIGSRGPHVV KSEGASMCAS ESSSTF*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESKSSDPST SSPNPDINTI PSKPPNNGTS NSTLFGFSNH NPNPTPLRAP HHRRAHSELT  60
FRIPHDMDLS SDPFTTSSNE EIGSEDDIFT TYIDVDKFGA SGSGPHIGLG LSVDGDHRVL  120
TNDNNININS SENNNNDDNN AGRPRHRHSN SVDAMTSSGG GSGNVFGEIM EAKKAMPPDK  180
LAELWTIDPK RAKRILANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLTLYQRD  240
TTGLTTENTE LKLRLQAMEQ QAQLRDALNE ALKQEVERLR AATGEMMGPS ESFNLGMHGM  300
QYNHSAFYPL PQQHAPQAQQ SMQLPSYHQS QGNMHHMHSS NSQNPSEFMP NDHLGRLQGL  360
DIGSRGPHVV KSEGASMCAS ESSSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858195.1	0.0	transcription factor RF2b-like isoform X2
Swissprot	O22873	1e-102	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0K9QEM3	0.0	A0A0K9QEM3_SPIOL; Uncharacterized protein
STRING	XP_010685977.1	1e-180	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-100	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013439-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]