PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013452-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YB
Protein Properties Length: 192aa    MW: 21574.2 Da    PI: 4.0893
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013452-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.91e-1215107793
            NF-YB   7 flPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      +lP + v r++k  l +      +  + k+a     e +  fi ++++ a+d c++ kr+ i++dd+l al ++ f ++vepl++ l ++r+ 
  AHYPO_013452-RA  15 ELPKTIVRRVVKDKLSEvstdggDVTLHKEALLAFSESARIFIHYLSATANDICHESKRQIISADDVLNALEEIEFSEFVEPLRKSLDEFRKK 107
                      6777788888888776511111133456778888899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-3212151IPR009072Histone-fold
PfamPF008082.1E-81585IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.46E-2016133IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGKVTAAAAV TEAEELPKTI VRRVVKDKLS EVSTDGGDVT LHKEALLAFS ESARIFIHYL  60
SATANDICHE SKRQIISADD VLNALEEIEF SEFVEPLRKS LDEFRKKAAG KRAGSAKAKE  120
ANKKRKTDDE TATENSKDDD KVEDEDKVED EVNEVEENDD EEEEDDEAEE EEEEEKDEEQ  180
VREEKDDSHD N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A3e-141618118180DNA polymerase epsilon subunit D
5y27_A3e-141618118180DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104125RKKAAGKRAGSAKAKEANKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686000.16e-74PREDICTED: DNA polymerase epsilon subunit 3 isoform X1
TrEMBLA0A0K9R1399e-68A0A0K9R139_SPIOL; Uncharacterized protein
STRINGXP_010686000.12e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-38nuclear factor Y, subunit B11