PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013468-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 190aa    MW: 21111.1 Da    PI: 7.6335
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013468-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-183779246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++++ Ede++++a+k +G++ W+tIa+ ++ gRt++ +k++w++
  AHYPO_013468-RA 37 KPFSPSEDEIIIQAHKAHGNR-WATIAKLLP-GRTDNAIKNHWNS 79
                     689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4633IPR009057Homeodomain-like
PROSITE profilePS5129423.8053185IPR017930Myb domain
SuperFamilySSF466891.36E-153384IPR009057Homeodomain-like
SMARTSM007172.5E-163583IPR001005SANT/Myb domain
PfamPF002494.8E-163779IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-223882IPR009057Homeodomain-like
CDDcd001672.60E-133881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKDTINVVVK DRVKGSWTPQ EDTTLKTLVD QHDVQHKPFS PSEDEIIIQA HKAHGNRWAT  60
IAKLLPGRTD NAIKNHWNSS LRRKRGVPQV ANELGSELKR QRVEAVLPES ESDSVVVKKE  120
VSSGVVMEQD NNGGGEGSDG VETVLTLLPP GKGTRDGGCD EMKIMMKSTV EMKTNCWLDL  180
MQRMIAKEVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-1913843104MYB PROTO-ONCOGENE PROTEIN
1idy_A4e-193384253MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A4e-193384253MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1mbj_A4e-193484151MYB PROTO-ONCOGENE PROTEIN
1mbk_A4e-193484151MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-1913843104C-Myb DNA-Binding Domain
1msf_C7e-1913843104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732631.14e-71transcription factor MYB44-like
TrEMBLA0A0K9Q7102e-57A0A0K9Q710_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010666145.18e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-24myb domain protein 77