PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013471-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 180aa MW: 20091.6 Da PI: 7.0709

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013471-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.2	3.8e-40	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C+++C++apyf a++pkkfa vhk+FGasnv+k+l+++pe +re++++sl yeAear++dPvyG++g i lq ++ ql+++l AHYPO_013471-RA 13 SCAACKLLKRRCSSNCIFAPYFRADEPKKFAKVHKVFGASNVSKILNEVPEYQREETVNSLSYEAEARLQDPVYGCIGAIAFLQTRMFQLQHDL 106 6********************************************************************************************* PP DUF260 95 allkee 100 al++++ AHYPO_013471-RA 107 ALAQAR 112 *99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-39	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKNGHNEPRS SSSCAACKLL KRRCSSNCIF APYFRADEPK KFAKVHKVFG ASNVSKILNE 60 VPEYQREETV NSLSYEAEAR LQDPVYGCIG AIAFLQTRMF QLQHDLALAQ ARLAQYRTSG 120 TVLHSNINTD TTNNNVNIIH MNLCREEHII SSDQFNQSDS CGYDTITSDF GQVPDLLPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-45	8	116	6	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-45	8	116	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021732655.1	1e-91	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	4e-57	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0K9QQM5	2e-81	A0A0K9QQM5_SPIOL; Uncharacterized protein
STRING	XP_010689397.1	9e-83	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-51	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	AHYPO_013471-RA

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]