PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013476-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 254aa MW: 28768.9 Da PI: 7.0588

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013476-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.5e-32	72	125	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ AHYPO_013476-RA 72 PRLRWTPDLHLCFVQAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 125 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.43	68	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-31	68	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-15	69	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	72	127	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	73	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MYEDEKEEDE EEEAKGEVDD NNSNINNNSN SNNNSNSKLN GSSLSSSTVE VGDKKGPTSS 60 GSVRPYNRSK TPRLRWTPDL HLCFVQAVER LGGQERATPK LVLQLMNVKG LSIAHVKSHL 120 QMYRSKKIDE SNQALNNQGI FIDGRDNIYD LSQLPMLQGY NNQRSSTFSL RYDDSSWRPY 180 QSNHIYAPYT IGTSTGSDMS RIRSNWITQQ THKQDPIIQT NASLLSCQFT NIRPIRESME 240 FNLAISPFPK IVTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021732658.1	1e-100	two-component response regulator ARR1-like
TrEMBL	A0A0K9R1I5	3e-93	A0A0K9R1I5_SPIOL; Uncharacterized protein
STRING	XP_010693076.1	6e-84	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-49	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013476-RA