PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013514-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family DBB
Protein Properties Length: 225aa    MW: 24626.1 Da    PI: 6.3783
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013514-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e   +++fC  ++  lC+ C ++ H
  AHYPO_013514-RA  4 LCDVCEGAAAIFFCAADEAALCRACDEKVH 33
                     7******99******************998 PP
2zf-B_box27.85e-095392338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                      +kC+ +e+ ++ ++Ce +++ lC +C ++ H g    H+
  AHYPO_013514-RA 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMAVHVGgkrtHR 92
                     589*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.954147IPR000315B-box-type zinc finger
CDDcd000214.36E-6333No hitNo description
PfamPF006433.6E-6334IPR000315B-box-type zinc finger
SMARTSM003367.5E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2715196IPR000315B-box-type zinc finger
PfamPF006438.7E-75392IPR000315B-box-type zinc finger
CDDcd000211.86E-85493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRTLCDVCEG AAAIFFCAAD EAALCRACDE KVHMCNKLAS RHIRVGLAAP TAVPKCDICE  60
NAPAFFYCEI DGSSLCLQCD MAVHVGGKRT HRRYLLLRQR AEFPGDKYGN GEHMGLQQVD  120
RMDVRREPNQ SPNATVTEKE KNHVVFVDGN VVPDAQMDNK MIDLNARPQR NMLQSSNNQG  180
MDDAPEANGD SASFVPCGML GYWRSHKPGG LFSGEMSIPL GLQC*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021753490.11e-117B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM57e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9QIE51e-103A0A0K9QIE5_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QJY41e-103A0A0K9QJY4_SPIOL; Uncharacterized protein
STRINGXP_010690759.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-64DBB family protein