PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013524-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SRS
Protein Properties Length: 229aa    MW: 25047.8 Da    PI: 8.9344
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013524-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702192.21.9e-59101633153
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk.aaasaaeaaskrkrelkskkqsa.lsstklssa 94 
                      s+t+sCqdCGn+ak+dC h+RCRtCCksrgf+CathvkstWvp+a+rr++ qq+++++++ +  s++ +++ +++ +++++ +  ls ++++++
  AHYPO_013524-RA  10 STTTSCQDCGNKAKRDCGHMRCRTCCKSRGFQCATHVKSTWVPVARRRQKLQQQQQQHHHhHLLSNTVDHQYHHQYHHHHHLTLpLSLSNIHHH 103
                      6789**********************************************66655554440444444444444444433333331344444444 PP

           DUF702  95 es.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      ++ ++ +e++++P+ev+s a frc+rvss d+  +++aYqt+++igGhvfkGiLydqG  
  AHYPO_013524-RA 104 NPtSTGVEAANFPAEVNSLATFRCIRVSSEDNVVDQYAYQTSITIGGHVFKGILYDQGFT 163
                      43134567778***********************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
PfamPF051424.2E-5612162IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-251456IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-23115161IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKSSSGGSSS TTTSCQDCGN KAKRDCGHMR CRTCCKSRGF QCATHVKSTW VPVARRRQKL  60
QQQQQQHHHH HLLSNTVDHQ YHHQYHHHHH LTLPLSLSNI HHHNPTSTGV EAANFPAEVN  120
SLATFRCIRV SSEDNVVDQY AYQTSITIGG HVFKGILYDQ GFTTASRGGE TSSAATSDNQ  180
PFSVAATMAA TQSSGGGANI VYHPPSLYSA PSFNAFLPGM QFFPHPRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738683.11e-104protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0K9RW435e-93A0A0K9RW43_SPIOL; Uncharacterized protein
STRINGXP_010690810.15e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.15e-50Lateral root primordium (LRP) protein-related