PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013530-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family DBB
Protein Properties Length: 175aa    MW: 19529.3 Da    PI: 4.6202
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013530-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06429530
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedCl 30
                      C+ +e++e++ fC  ++  lCe C 
  AHYPO_013530-RA  4 QCDVCEKQEAIVFCAADEAALCEGCD 29
                     7************************7 PP
2zf-B_box20.51e-0632611138
         zf-B_box 11 ekelqlfCedCqqllCedClleeHkg..Ht 38
                     ek++ lfC++++  lC++C   +Hk   Ht
  AHYPO_013530-RA 32 EKRAFLFCREDRAILCRECDIPIHKAneHT 61
                     566889******************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9542069IPR000315B-box-type zinc finger
SMARTSM003361.3E-122069IPR000315B-box-type zinc finger
CDDcd000213.37E-72457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKIQCDVCEK QEAIVFCAAD EAALCEGCDY REKRAFLFCR EDRAILCREC DIPIHKANEH  60
TQNHNRYLLT GVKISASSST YINGSDGSSS SSELNSISNT KTSISSCDHD NNNMFNQSYS  120
NNTIYTNTPS STTMNNHNNH VDEEGISEYL MESLPGWRLE DLLDSSSASH NLYF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849954.13e-73B-box zinc finger protein 20-like
SwissprotQ0IGM71e-42BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A0K9QAT58e-72A0A0K9QAT5_SPIOL; Uncharacterized protein
STRINGXP_010690797.12e-62(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-34salt tolerance homolog2
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]