PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013539-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 321aa    MW: 35564.6 Da    PI: 5.2888
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013539-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23e-20239272134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C++tkTp+WR gp+g+ktLCnaCG+++++ +
  AHYPO_013539-RA 239 CTHCQVTKTPQWRAGPNGPKTLCNACGVRFKSGR 272
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.2E-744316IPR016679Transcription factor, GATA, plant
SMARTSM004015.1E-16233287IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-14235296No hitNo description
PROSITE profilePS5011411.859237269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-15237270IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.60E-15238286No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003206.3E-18239272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MECMEARALK SCYSTELAMK SSNPQGYTED YVCVTGSTNE EFSIDEFFDL PNEENIDGFE  60
EEEEKDSSNS FSSQDHVDDF NYNFDNFSAD LAIPADAMEE LELWSHFMDD SIPEHTFACP  120
NPVLEGYKSK TGFNSMNRVE PVNEPVFVRV PGLTSAVPVK PRSKRSRSGN FSWSFNSSSK  180
TESSSSSSSS SPVSTLLFPP PVYNMGMIFG FEKPAPKKQK KKPAVPSAVG ENPPVQRRCT  240
HCQVTKTPQW RAGPNGPKTL CNACGVRFKS GRLFPEYRPA CSPTFSSEMH SNSHRKVLEM  300
RKKKEGTESE TGSIPSVLSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222PKKQKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021753502.11e-147GATA transcription factor 5-like
TrEMBLA0A0K9QTQ31e-133A0A0K9QTQ3_SPIOL; GATA transcription factor
STRINGXP_010690771.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-39GATA transcription factor 5