PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013588-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 181aa    MW: 20327.5 Da    PI: 4.9343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013588-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183888155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  AHYPO_013588-RA 38 PVYRGVRKRR-WGKWVSEIREPKK---KNRIWLGSFPLPEMAARAYDVAAHCLKG 88
                     68*****887.**********854...59***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103222.6553996IPR001471AP2/ERF domain
SMARTSM003807.2E-3239102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-303997IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213998IPR016177DNA-binding domain
PRINTSPR003676.2E-124051IPR001471AP2/ERF domain
CDDcd000188.12E-314097No hitNo description
PRINTSPR003676.2E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEQPQCNVDQ FEDSEQSPEP TTGGPHLSKI QGSGTRHPVY RGVRKRRWGK WVSEIREPKK  60
KNRIWLGSFP LPEMAARAYD VAAHCLKGCK AQLNFPDEIQ FLPRPASNSA RDIQAAAAKA  120
ANAVGLGHVE EGGPSDLYDH HDDHDDDDFW REIDLPELLE TEQGGYFIDF YNTSFGDLYL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-173198674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696241.13e-73PREDICTED: ethylene-responsive transcription factor ERF023
RefseqXP_021760206.12e-73ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-47ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0K9QU673e-61A0A0K9QU67_SPIOL; Uncharacterized protein
STRINGXP_010696241.11e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]