PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013618-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 311aa    MW: 34602.2 Da    PI: 7.9868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013618-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-21123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  AHYPO_013618-RA 123 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAESAARAYDEAALRFRG 172
                      8********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-33122181IPR001471AP2/ERF domain
SMARTSM003807.7E-39123186IPR001471AP2/ERF domain
CDDcd000181.57E-36123182No hitNo description
SuperFamilySSF541717.85E-23123181IPR016177DNA-binding domain
PfamPF008472.5E-14123172IPR001471AP2/ERF domain
PROSITE profilePS5103225.528123180IPR001471AP2/ERF domain
PRINTSPR003675.6E-12124135IPR001471AP2/ERF domain
PRINTSPR003675.6E-12146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKMKDILSPM IPGFSREKEM REMVSALTYV VSGAASSSLN HGLKRTHDYQ DDDVKPVSLS  60
SSYTYLPIKG GPSYTSSSTT TTTAASETST FTYTHHDSPN KNTINITPQS HQVGGTGQPS  120
RRKYRGVRQR PWGKWAAEIR DPYKAARVWL GTFDTAESAA RAYDEAALRF RGSKAKLNFP  180
ENVTSHNIQT NLPTTHLSFS DPPQTHLTPS QNSQHLLHNQ STMEFLEANS QDYKDYIDYS  240
RLITGSFDDN QSDLRFSLWN QMLTTPPPPS NNTMMSTSLS TPQLVYRVDD IDPRGSQTKI  300
EDSKDTSGGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25122185468ATERF1
3gcc_A1e-25122185468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854895.17e-91ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0K9RX289e-79A0A0K9RX28_SPIOL; Uncharacterized protein
STRINGXP_010680295.12e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.18e-30related to AP2 6