PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013629-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 242aa    MW: 26172 Da    PI: 10.2859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013629-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-1468114253
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      +++h+e+ErrRR+riN+ +++Lr+llP++     +K +Ka++L ++v+ + +
  AHYPO_013629-RA  68 CKSHKEAERRRRKRINTHLATLRTLLPNL-----TKTDKASVLAEVVRRVTD 114
                      789*************************9.....9********999986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35166115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1168114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-469118No hitNo description
Gene3DG3DSA:4.10.280.102.6E-1270118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1370127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1072121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.3E-7155207No hitNo description
CDDcd048732.06E-4156203No hitNo description
SuperFamilySSF550211.07E-5156221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGSYYEGGNS SNNNNIHSNN TNYLQRAVNE NSSNKSLLES NTMIVPPLMI CSSSKATISP  60
EAKALAACKS HKEAERRRRK RINTHLATLR TLLPNLTKTD KASVLAEVVR RVTDLKKATS  120
ELASGRHVNY DGCNACLLPG DIDEVNLRRS GNDHSTLIAT LCCEDRPDLI VDLSRALRSV  180
KGKVVKAEMA TIGGRTKSIL WVRGVGGGGP EGLLKRALKV VVDKPSCSSG LAHGLRMHRP  240
Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680330.11e-105PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0K9RIG11e-94A0A0K9RIG1_SPIOL; Uncharacterized protein
STRINGXP_010680330.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-34bHLH family protein