PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013633-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 248aa    MW: 28329.8 Da    PI: 9.4614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013633-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32170228159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  AHYPO_013633-RA 170 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHT 228
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-33155228IPR003657WRKY domain
SuperFamilySSF1182901.7E-28162228IPR003657WRKY domain
PROSITE profilePS5081129.172165230IPR003657WRKY domain
SMARTSM007745.9E-37170229IPR003657WRKY domain
PfamPF031064.1E-25171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLNQGLMEDH HQVGGISSSQ MMGFYLNSTN LANYAPLFNH NHNHNHNHQQ YNDLKPFNTL  60
PSSFALDHVT STLTQALLSS TNPKCIEQDY SSSSFTNLPP LFSIQKPTPN YNLWSLGEGK  120
EFQLGGSKRS CGGENSILGV STLKMKKIKA RRKVREPRFC FKTMSDVDVL DDGYKWRKYG  180
QKVVKNTLHP RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHIHTPS NDDDSHGGQP  240
QLNNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26161227874Probable WRKY transcription factor 4
2lex_A3e-26161227874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680328.11e-145PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A0K9R4U46e-99A0A0K9R4U4_SPIOL; Uncharacterized protein
STRINGXP_010680328.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-61WRKY DNA-binding protein 13