PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013688-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 600aa    MW: 65075 Da    PI: 8.5165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013688-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-08245265526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f + G Ck Gd C FaHg
  AHYPO_013688-RA 245 PCPEFKK-GSCKKGDDCEFAHG 265
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-134137IPR020683Ankyrin repeat-containing domain
CDDcd002042.25E-1153134No hitNo description
PfamPF127961.2E-654127IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-1356138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.64558134IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0135887IPR002110Ankyrin repeat
SMARTSM002482.394126IPR002110Ankyrin repeat
PROSITE profilePS500889.64494129IPR002110Ankyrin repeat
PROSITE profilePS5010313.385240267IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5240266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5244266IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5245265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4272304IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.765275299IPR000571Zinc finger, CCCH-type
SMARTSM0035656275298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGMEITHQES TQNSTLLELA ASDDLNGFKF SVESLGLSIH EMGLWYTRRI GSNKMGYEQR  60
TPLMIAAQYG SVNVLDYILN SVNSVDVNRV SGSDRVTALH CAVAGGSQSS SSVIHRLVSS  120
SANLNIVDSN GNKPSDLLPM LPKLPTKGNK QIDSLLKSGF SDSDSSSSSG SVSDCDSDSK  180
KEFAVSDLPD INNGVYGSDE FRMYSFKIKP CSRAYTHDWT ECPFAHPGEN ARRRDPKKYQ  240
YTCVPCPEFK KGSCKKGDDC EFAHGVFESW LHPAQYKTRL CKDEIGCARK VCFFAHRKDE  300
LRPVYASTGS AIPDVTSSPP MSPSFAPLSP GSGASPGGGG MYEGKSRFGI SPPNLQLPGS  360
RLRSSLNARD FESERKLIEF EAQLMNQQQQ YNQIHSPRPS PKWNSTMIPP TNLEAAFASI  420
NVARKMSPPN GVESPRNAPR RLSPPRALDS PKSVAAAMLN SRAAAFAKRS QSFVERVGSP  480
PFGANMSSPM STNMTDWGSP NGKLDWGMNG QELNKLKKSN SFGIRGGSNN AIRTSPPGFN  540
EPDVSWVNSL VKDEAGAGFL GAKAASFGRG GVGNNGVQVQ VQDMCSPWEQ LYIEEQRVI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689596.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
TrEMBLA0A0K9REK40.0A0A0K9REK4_SPIOL; Uncharacterized protein
STRINGXP_010689596.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-151C3H family protein