PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013716-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 343aa    MW: 38975.5 Da    PI: 7.2716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013716-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.8e-10123144526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ ++r+G C +Gd C FaHg
  AHYPO_013716-RA 123 VCPEYRRSGDCTRGDECEFAHG 144
                      7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.24E-6117148IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.587119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6122146IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8123144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4151182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.061154178IPR000571Zinc finger, CCCH-type
SMARTSM003562.3154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGSSVCEHHY HTHKFHPLIS PKQALQDLNI PPRKLLSRRS SDLSDGYDGD SSSMQKLSSS  60
RESDVFFDTD DDPYSSDDFR MYEFKVRKCT RSRSHDWTDC PFSHPGEKAR RRDPRRYHYS  120
GTVCPEYRRS GDCTRGDECE FAHGVFECYL HPARYRTEAC KDGKSCKRKV CFFAHSPREL  180
RVLPLEDVER KETDVVQHEQ HCCKYCCTLS PTSTLLGLSN FSPPLSPSPS PKTSMGPRAG  240
LTRYSDRAIA CANKGPSYED MVIADLLGSI NLNESLSPNK GIINRRELWV DVNGSDNEIP  300
NNYIQINPSI FSSNSRNLFP TTIKNNGVEE SPDLRWVNDL LM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689060.11e-130PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA13e-76C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0K9QWU31e-115A0A0K9QWU3_SPIOL; Uncharacterized protein
STRINGXP_010689060.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-67C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]