PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013784-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 609aa    MW: 67889.7 Da    PI: 6.7808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013784-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86.1e-06317335826
                      GGGGTS--TTTTT-SS-SS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                       ++ +GtC++Gd+C+F H+
  AHYPO_013784-RA 317 KYLSSGTCPRGDNCHFRHD 335
                      67779***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.55E-439235No hitNo description
PROSITE profilePS5010315.582309337IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7311338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-8313337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014341369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5342369IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-4343368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF541974.68E-7382453IPR011146HIT-like domain
PfamPF046772.9E-36383500IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.104.7E-5392452IPR011146HIT-like domain
PfamPF046761.4E-16536603IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGSSPPRILL SGDVYGRLSQ LFKRVNSVNK SAGPFDALFC VGQFFPDSTQ QLEEFMEYIS  60
GQRDIPIPTY FIGDYGVGAP KVLSTAARDP ANQGFMMDGL RVCHNLFWLK GGGKFTIFGL  120
SVAYLSGRQS PSGQQFGTYS QDDVDGLRAL AEEPGIVDLF LTNEWPSGVT NMAPANDIPP  180
GISDPLGGDS TVAELVAEIK PRYHITGSKA VFYAREPYSN VNAVHVTRFF GLAPVGNKEK  240
QKFLHAISPT PASTMSAIEI SNKPPNTTPS PYKVGDNTPS RETTKRPGDN TLEEQYWRYD  300
VKKQKQGDGN REKMCFKYLS SGTCPRGDNC HFRHDEEARE QYARGVCFDF LNKGKCERGP  360
ECQFKHSLVE EGESITNRRS RSQNASTNRS RECWFCLSSP NVESHLIISV TEHLYCALAK  420
GPLVDDHVLL IPVEHSPNTL SLPSDCQKEL HKYQSCLRMF GKTQRKEFIF FELISKRGTH  480
ANLQALPIPQ SKASSVKSIF NLAAKKLGFD FEAIKGDDVS EARELLKARF DGISGFFYVE  540
LHDGTILGHT IDENENFPVQ FGREVMAGLL KMPDKADWRN CKLSKDEEVK LVEDFKLQFK  600
NFDPSEDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667169.10.0PREDICTED: zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A0J8B6N20.0A0A0J8B6N2_BETVU; Uncharacterized protein
STRINGXP_010667169.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-07C3H family protein