PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013808-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 281aa    MW: 31259.4 Da    PI: 9.1683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013808-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +++++G+g Wk+I +          R+  ++k++w++
  AHYPO_013808-RA  5 KQKWTSEEEEALRAGIAKHGPGKWKLIQKDPEfnpylHSRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.639161IPR017930Myb domain
SuperFamilySSF466897.18E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-14456IPR009057Homeodomain-like
SMARTSM007171.0E-8459IPR001005SANT/Myb domain
PfamPF002491.1E-8555IPR001005SANT/Myb domain
CDDcd116602.72E-20656No hitNo description
SMARTSM005265.6E-13118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.3E-13119191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-15119197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.02120188IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-9122182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGI AKHGPGKWKL IQKDPEFNPY LHSRSNIDLK DKWRNMSAAV  60
QGSRDKSRPL KLKSPGQDVH PATPLVTSQP LAMLPAPVAQ HETADHVKDD SAKDLPDAKN  120
GPRYNDMIFE ALTAVKEQNG LDISAFVAYI EKKMEVPHNF RKQLGARLRR LVQQDKLEKV  180
DGLYRLKSKN STETNASNRK DIWARQQLAS VYSKVGQSLE EAAKTAAYKV VEAEEKANSA  240
AEAVIEAEKL SKLAEETDSI LQFAEEILGR CTRGDVIYVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696540.11e-136PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A067KFT23e-92A0A067KFT2_JATCU; Uncharacterized protein
STRINGXP_010696540.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-55MYB_related family protein