PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014022-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 258aa    MW: 28572.7 Da    PI: 7.4363
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014022-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20137171135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  AHYPO_014022-RA 137 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 171
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-19131183IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13134172No hitNo description
PROSITE profilePS5011413.784135167IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-17135171IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-13136168No hitNo description
PROSITE patternPS003440137162IPR000679Zinc finger, GATA-type
PfamPF003205.9E-18137171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVGPFNEYYQ QQQQYPYYNN NNNNNNNYNY NNGGLCYDDD ETDNMYSSSS STSSYSSVDC  60
TLSLGTPSTR LSNPKTNSNN TPHRNSVSSF CWDLLHPNKQ SNSNSNSNSK SSSSRGGGNN  120
HSSAGGNASD PLFLRRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRAAAASTTA  180
ASNNVPTNSV MDPHHGYYNG SWGQQYTQTT PQKMQCYGAP NEFMFMEDER TSSETGIQFL  240
SWLTHDRPTG LVHDFTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718016.11e-102GATA transcription factor 19-like
TrEMBLA0A0K9S0Y41e-94A0A0K9S0Y4_SPIOL; Uncharacterized protein
STRINGXP_010679730.11e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-30GATA family protein