PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014049-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 222aa    MW: 25324 Da    PI: 9.42
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014049-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.54.1e-2148106160
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      ldDgynWrKYG Ke+ +++ +++Y++C++++Cp kk + ++  +++ ++++++ eHnh+k
  AHYPO_014049-RA  48 LDDGYNWRKYGNKEIIKNKSSKGYFKCSYPNCPGKKTIGTTL-NGHNITVVNTKEHNHPK 106
                      59***************************************9.999999*********85 PP
2WRKY72.94.1e-23181221141
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers 41 
                      ldDgy+WrKYG K+vkg+++pr YY+Cts+gC vkk+ver+
  AHYPO_014049-RA 181 LDDGYKWRKYGAKVVKGNPNPRLYYKCTSKGCLVKKQVERA 221
                      59*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-1940107IPR003657WRKY domain
PROSITE profilePS5081115.3343107IPR003657WRKY domain
SuperFamilySSF1182901.57E-1744107IPR003657WRKY domain
SMARTSM007743.9E-1848106IPR003657WRKY domain
PfamPF031061.3E-1549105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-24166221IPR003657WRKY domain
SuperFamilySSF1182903.79E-20174221IPR003657WRKY domain
PROSITE profilePS5081125.522176222IPR003657WRKY domain
SMARTSM007746.7E-17181222IPR003657WRKY domain
PfamPF031063.1E-17182221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
GQSSNLIQEE IVKSEILTRE SEDSNHENTI KNEPEQNSFF KSANHKGLDD GYNWRKYGNK  60
EIIKNKSSKG YFKCSYPNCP GKKTIGTTLN GHNITVVNTK EHNHPKPANR RRSSSLTYQN  120
DLSSRQFELE NSLDSQRWSS GGDDLDDDEP QAKRRNDPNK IVSEVKEPRV VIQVTSDNDV  180
LDDGYKWRKY GAKVVKGNPN PRLYYKCTSK GCLVKKQVER AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20172222858Probable WRKY transcription factor 4
2lex_A1e-20172222858Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685944.15e-59PREDICTED: WRKY transcription factor WRKY24
SwissprotQ6B6R48e-51WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-50WRK24_ORYSJ; WRKY transcription factor WRKY24
SwissprotQ9C5T34e-53WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLO816393e-52O81639_PIMBR; Zinc finger protein
STRINGXP_010685944.12e-58(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-56WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  6. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]