PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014059-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 69aa MW: 7518.78 Da PI: 8.7825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014059-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40	1.1e-12	33	67	1	35
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhk 35 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk AHYPO_014059-RA 33 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHK 67 7*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.187	32	69	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-11	33	67	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MVASNSCYNM MGVGPTPTPT PPPLGTPLNT ITPCAACKLL RRRCAEECPF SPYFSPHEPQ 60 KFAAVHKRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716783.1	9e-31	LOB domain-containing protein 15-like
Swissprot	Q9AT61	4e-23	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0K9RA50	1e-24	A0A0K9RA50_SPIOL; Uncharacterized protein
STRING	XP_010685965.1	3e-25	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-19	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	AHYPO_014059-RA

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]