PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014198-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9906.81 Da    PI: 10.8078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014198-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien s rqvtf+kRr+g++KKA+ELS+LCda++ +i+fss+g+lyeys+
  AHYPO_014198-RA  9 KKIENISARQVTFAKRRKGLIKKAQELSTLCDAQIGLIVFSSSGRLYEYST 59
                     78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.84E-26163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.917161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-35160IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MVRSRIQIKK IENISARQVT FAKRRKGLIK KAQELSTLCD AQIGLIVFSS SGRLYEYSTS  60
RFISLPFSLL NLFIYLFFIY SFCKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-15360259Myocyte-specific enhancer factor 2A
3mu6_B1e-15360259Myocyte-specific enhancer factor 2A
3mu6_C1e-15360259Myocyte-specific enhancer factor 2A
3mu6_D1e-15360259Myocyte-specific enhancer factor 2A
6byy_A2e-15160160MEF2 CHIMERA
6byy_B2e-15160160MEF2 CHIMERA
6byy_C2e-15160160MEF2 CHIMERA
6byy_D2e-15160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773608.14e-30MADS-box protein AGL24-like
RefseqXP_021773613.14e-30MADS-box protein AGL24-like
SwissprotQ9LT935e-25AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A0K9QJB01e-28A0A0K9QJB0_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QV683e-28A0A0K9QV68_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QWT33e-28A0A0K9QWT3_SPIOL; Uncharacterized protein
STRINGXP_010690400.16e-28(Beta vulgaris)
STRINGXP_010691402.17e-28(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-27AGAMOUS-like 71